Publication table with gt — gt

Numbers rounded (scientific notation when they would print as 0, see fmt_num()), whole-number columns without decimals, p-value columns detected from their name (a separate token p, e.g. p, p.value, p_adj, McNemar p, or FDR) and formatted with fmt_p(), bold when below 0.05, missing p-values shown as a dash; optional source note.

Usage

gt_pub(
  df,
  title = NULL,
  subtitle = NULL,
  groupname_col = NULL,
  p_cols = NULL,
  decimals = 2,
  font_size = 12,
  note = NULL,
  auto_p = TRUE
)

Arguments

df: A data frame.
title, subtitle: Title and subtitle (Markdown).
groupname_col: Optional column defining row groups.
p_cols: Columns of p-values, in addition to those detected.
decimals: Decimals of the other numeric columns.
font_size: Font size, in pixels.
note: Optional source note (Markdown), e.g. model, adjustment, N.
auto_p: Detect p-value columns from their names.

Value

A gt_tbl.

Examples

tab <- describe_normality(cohort_sim, c(AGE, NFL_V0, CRP_V0))
gt_pub(tab, title = "Normality", note = "Shapiro-Wilk test")


  Normality
    
Variable
      Label
      N
      W
      p_Shapiro
      p_AD
      Skewness
      Kurtosis
      Verdict
    
AGE
AGE
120
0.99
0.44
0.21
-0.09
0.23
Compatible with normality
NFL_V0
NFL_V0
120
0.81
3.1×10⁻¹¹
1.5×10⁻¹⁰
2.48
10.48
Strong skewness: transform / non-parametric
CRP_V0
CRP_V0
115
0.59
<2.2×10⁻¹⁶
<2.2×10⁻¹⁶
3.93
20.22
Strong skewness: transform / non-parametric
Shapiro-Wilk test

Variable	Label	N	W	p_Shapiro	p_AD	Skewness	Kurtosis	Verdict
Normality
AGE	AGE	120	0.99	0.44	0.21	-0.09	0.23	Compatible with normality
NFL_V0	NFL_V0	120	0.81	3.1×10⁻¹¹	1.5×10⁻¹⁰	2.48	10.48	Strong skewness: transform / non-parametric
CRP_V0	CRP_V0	115	0.59	<2.2×10⁻¹⁶	<2.2×10⁻¹⁶	3.93	20.22	Strong skewness: transform / non-parametric
Shapiro-Wilk test